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Substitution matrix
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#	Item
21	Weighted next reaction method and parameter selection for efficient simulation of rare events in biochemical reaction systems Add to Reading List Source URL: bsb.eurasipjournals.com Language: English Computational phylogenetics Sequence alignment Sequence analysis Multiple sequence alignment BLAST Nucleic acid sequence Substitution matrix Sequence database Phylo Bioinformatics Science Biology
22	p J . Mol. B d, Amino Acid Substitution Matrices from an Information Theoretic Perspective Add to Reading List Source URL: www.virtual.unal.edu.co Language: English - Date: 2013-05-16 18:26:15 Biology Substitution matrix Sequence alignment Point accepted mutation BLAST STING Smith–Waterman algorithm Matrix Amino acid Bioinformatics Computational phylogenetics Science
23	Biochemistry (Moscow), Vol. 60, No. 8, 1995 GeneBee-NET: Internet-Based Server for Analyzing Biopolymers Structure L. I. Brodsky,1,2 V. V. Ivanov,1 Ya. L. Kalaydzidis,3 A. M. Leontovich,3 V. K. Nikolaev,1 S. I. Feranch Add to Reading List Source URL: www.genebee.msu.su Language: English - Date: 2001-10-11 03:08:30 Computational science Sequence alignment Multiple sequence alignment Nucleic acid sequence Protein secondary structure Smith–Waterman algorithm Position-specific scoring matrix Structural alignment Substitution matrix Bioinformatics Computational phylogenetics Science
24	Comparing Kernels For Predicting Protein Binding Sites From Amino Acid Sequence Feihong Wu1,2,5,7 , Byron Olson6,8 , Drena Dobbs3,4,5,6,9 and Vasant Honavar1,2,4,5,6,10 Abstract— The ability to identify protein binding Add to Reading List Source URL: www.cs.iastate.edu Language: English - Date: 2006-05-28 21:12:24 Science Chemistry Protein structure Matrices DNA Sequence alignment Substitution matrix BLOSUM Multiple sequence alignment Bioinformatics Biology Computational phylogenetics
25	The Effect of Closure on the Estimation of Divergence Times in Phylogenetics Bodie Kaine Supervisors: Dr. Jeremy Sumner and Dr. Barbara Holland Modelling Nucleotide Substitution Add to Reading List Source URL: www.maths.utas.edu.au Language: English - Date: 2011-11-10 07:15:16 Stochastic matrix Markov models Markov processes Markov chain
26	October 3, [removed]:34 WSPC/185-JBCB[removed]Journal of Bioinformatics and Computational Biology Vol. 5, No[removed]–1085 Add to Reading List Source URL: profs.sci.univr.it Language: English - Date: 2011-10-29 17:56:39 Science Statistics Nucleic acid sequence Phylogenetics Substitution model PHYLIP Genetic code Similarity matrix Amino acid Biology Computational phylogenetics Bioinformatics
27	LNCS[removed]2D Shapes Classification Using BLAST Add to Reading List Source URL: profs.sci.univr.it Language: English - Date: 2013-03-19 09:37:42 Biology Sequence alignment BLAST Smith–Waterman algorithm Multiple sequence alignment Substitution matrix Sequence analysis Phylo Gap penalty Bioinformatics Science Computational phylogenetics
28	Pairwise Sequence Alignments Patrick Aboyoun Gentleman Lab Fred Hutchinson Cancer Research Center Seattle, WA April 16, 2015 Add to Reading List Source URL: www.bioconductor.org Language: English - Date: 2015-04-16 22:10:00 Computational science Sequence alignment Smith–Waterman algorithm Substitution matrix Gap penalty Needleman–Wunsch algorithm BLOSUM Point accepted mutation Alignment Bioinformatics Computational phylogenetics Science
29	Sums of generalized harmonic series and volumes by Frits Beukers , Eugenio Calabi Add to Reading List Source URL: www.staff.science.uu.nl Language: English - Date: 2003-11-06 09:03:46 Functions and mappings Multivariable calculus Differential calculus Integral calculus Integration by substitution Inverse function theorem Derivative Taylor series Jacobian matrix and determinant Mathematical analysis Mathematics Calculus
30	Identification of Local Conformational Similarity in Structurally Variable Regions of Homologous Proteins Using Protein Blocks Garima Agarwal1, Swapnil Mahajan1,2, Narayanaswamy Srinivasan1, Alexandre G. de Brevern3,4,5 Add to Reading List Source URL: eprints.iisc.ernet.in Language: English* - Date: 2011-04-08 04:29:38 Protein methods Computational phylogenetics Statistics Protein structure Sequence alignment Structural alignment Homology modeling Root-mean-square deviation Substitution matrix Bioinformatics Biology Science

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